SE4540099

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3187
  • Cannabis sativa
  • SE4540099
  • CACTA
  • Ca1
  • scaffold149095:4111-4442
  • TAT
  • CACTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAT        AAAAC       TTTAGTGACAACCTTTAATCACAACATAATTTTTTTGTGACTAAATATGACTTTTAGTCACAACAAATGTTACTTGTGACTAAAATATAGTATTTAGTTACAAATTATCACTAATTTAGTTTTAGTCACAACAAGTATTGTGACT
   CACTACAA     TGTTACT                                                                                                                                                 
   ||||||||     |||||||                                                                                                                                                 A
   GTGATGTT     TAAAAAA                                                                                                                                                 
TAT        -----       ATGAAAATCAGTGTTGTTTTGAACACTGATTTTCATTTTTTTAACACTGATTAATATTTAATAATAAGAATACAACAGTGATTTTCCAGGCACCGATTTACATAATCAGTGTTTTTAATGTTAAACAATACTGATTTACATAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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