SE2430001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3191
  • Coccomyxa subellipsoidea
  • SE2430001
  • hAT
  • Hat1
  • scaffold_24:494166-494600
  • CCAGGATA
  • CCAGGATACATAGTTGCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
     A  ATA              ACGGCTGGTCAAAATTTGGGAGCGCGTTTGGGAACGCTCGCGACACCGCGACACCGCGGCACGCGTGTCGAAACCTGAGGACGTTAGTAACCATGTAATCAAGGGATGACTACAGGTTACTAAGGCTGACGGAACCTCAAAAAGCTGTTTCCGGACCCGACAACGCATCAAAACACATCGGAATTGTCTCTAAAC
   CC GG   CATAGTTGCACGAC                                                                                                                                                                                                   
   || ||   ||||||||||||||                                                                                                                                                                                                   A
   GG CC   GTATCAACGTGCTG                                                                                                                                                                                                   
ATA  A  ---              TGGACTGTGCCCCACAGCCACAGCCTCACAGCCCTTGCAAGGGTTTGCGCACAGCTCTAAAACCGGTAAAGGCTGTGGCGAGGCTGTGTCCCAATGCATTCCCAATGCAAGTTGGCAAAGACTGGCAAAAACCGGCGAACCTGCGGCCCTTTACTAGGTTGTTGTGGGGTTTGTGTATATCATGCGAATATTTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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