SE2430002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3192
  • Coccomyxa subellipsoidea
  • SE2430002
  • hAT
  • Hat2
  • scaffold_25:40581-40978
  • GTGCAACT
  • TGCAACTCAGTGTCACCGCATGCGAT

Secondary structure and sequence

TSD    TIR
5'



3'
  G    A T   T               --AATG   ---           TATAATTGC    G        ATAGCATTTTATTTT   --GCC                       -----------------------------------CC   ---  AAAGTGCTTTTTGGGGGCCTTTAGAGTCCCTTTGAGGACTTACTCCATCCCCAAGCCTGTCCACACTGA
   TGCA C CAG GTCACCGCATGCGAT      CGA   ATAATGCGATA         ATGC AGCATTAT               TGG     AGTAGAATGCGATAAAATGCGAT                                     TCT   CA                                                                     
   |||| | ||| |||||||||||||||      |||   |||||||||||         |||| ||||||||               |||     |||||||||||||||||||||||                                     |||   ||                                                                     G
   ACGT G GTC CAGTGGCGTACGCTA      GTT   TATTACGCTAT         TACG TCGTAATG               ACC     TTATTTTACGCTATTTTACGCTA                                     CCG   TG                                                                     
TCA    - -   C               GTAAGA   TTA           -------TT    A        ---------------   GCTTT                       TTTTATGCAAACCTTATCAAAACAGTAACAAAATAAC   TTT  CATCCATATCGGTCCATTTATCTTCCAAAAGGGACTTTTTAGTCTCATTTTGAGAAAACCTTACAAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End