SE2430003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3193
  • Coccomyxa subellipsoidea
  • SE2430003
  • hAT
  • Hat3
  • scaffold_17:270398-270595
  • TCTGGAGC
  • TCTGGAGCCATAGTTGCACCATACGGATTCGGCCATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
        GC              A   AT    -C     GGCATAC         TCGGTCGTATATTCGGTGTTTTGGGCCAAAATAGGCCGTTTTTGACC
  TCTGGA  CATAGTTGCACCAT CGG  TCGG  CATTT       GGGGAATAT                                               
  ||||||  |||||||||||||| |||  ||||  |||||       |||||||||                                               G
  AGGTCT  GTATCAACGTGGTA GCC  AGTC  GTGAA       CCCCTGGCA                                               
CG      --              A   --    TT     ----AAA         TATATGCCGGCTTATATGCCAGTATGCCATAATTTTATATGCCTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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