Plant MITE

SE2430005

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3195
Coccomyxa subellipsoidea
SE2430005
hAT
Hat4
scaffold_6:932740-933125
CTGCTCAT
TGCTCATCAGGGTTTGACAGC

Secondary structure and sequence

TSD TIR

5'

3'

C  CT  T          C   --  CCAAGGGCCCCCCAAGGGATTGGCCAACCCACTTCAGGGCTAGGGGTGACATTTCAGGGCAACCCCAGAATATATACAGATTTGGCAAAATGGCATCAGGACAACGCCTTGAAGCTACTTGGCTTTGACTTAGGGGCATTCCAGAATTTCAGGCATTTTGGACCACCT
 TG  CA CAGGGTTTGA AGC  CC                                                                                                                                                                        
 ||  || |||||||||| |||  ||                                                                                                                                                                         
 AC  GT GTCCCAAACT TCG  AG                                                                                                                                                                        
T  TC  C          T   CC  GATCTTCTAGAGTCCGGTCGGAGATTTATCCCGTTCCCGTCCGTCCCCGAAGCGGGGGCGGACGACGGGACTATCATCGACGGTCGAAGTCATTTTAAAGCCCCGTAGGGACTCCAAGGGTTTTATAAAGTTGTCCCTCTACATCCAAAAGGGAATTTAAACCGGAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2430005

CTGCTCATCAGGGTTTGACAGCCCCCAAGGGCCCCCCAAGGGATTGGCCAACCCACTTCAGGGCTAGGGGTGACATTTCAGGGCAACCCCAGAATATATACAGATTTGGCAAAATGGCATCAGGACAACGCCTTGAAGCTACTTGGCTTTGACTTAGGGGCATTCCAGAATTTCAGGCATTTTGGACCACCTGGAGGCCAAATTTAAGGGAAAACCTACATCTCCCTGTTGAAATATTTTGGGAACCTCAGGGATGCCCCGAAATTTTACTGAAGCTGGCAGCTACTATCAGGGCAGCAGGCGGGGGCGAAGCCCCTGCCTGCCCTTGCCCTATTTAGAGGCTGGCCTGAGATCTTCTAGGACCGCTTTCAAACCCTGCTGCTCAT

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