SE1130002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3251
  • Chlorella variabilis
  • SE1130002
  • hAT
  • Hat2
  • scaffold_19:876452-876950
  • TGCCCATG
  • GTAGGCCTGGGTGTAACCCTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TGCCCAT                  C   CCCC   TTTTCT     C   AGTATGGGTTAAATAACCATGGTTAGCATACTTGGTTATTTCACCGTTAGACAAAACAGTAACCCACCCAGAACCCCGCTAACCCGTACTATGCCATATGTATGCGTTAGAGCGGCGCGTTAGAGCGGCGCTGGCGGCATGAAATGCAGGCAGCATGTTCCAGTTTATGGTGCTAGATGCGTTTCCCATTGAAAATTGCACC
       GTAGGCCTGGGTGTAACC TGC    TCA      CTATG CGT                                                                                                                                                                                                          
       |||||||||||||||||| |||    |||      ||||| |||                                                                                                                                                                                                          C
       TATCCGGACCCACATTGG ATG    AAT      CATAC GAT                                                                                                                                                                                                          
GTACCCG                  T   -CCC   ------     -   GCAATCGTATGATTAGTCAATGATACCGTATCTTCTTAAAACTCCCACCAATGATGCGAAACCCTCTCCCAAGTATGCCGTATCATTGGCGCCCGCCCCTGCCATATCATTGCCGCCGCACCCCTGTCGCGTGTGCGGTTAGCCCCAGTGAGATTCGGACCTCCCTCATCTTTTTTAGGAGTATGTACGATGTCTCGAGGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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