SE4620002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3253
  • Eucalyptus grandis
  • SE4620002
  • Mutator
  • M1
  • scaffold_8:26550277-26550806
  • AAGAAAAAA
  • GGGTTAATACCCTGAAAACCCCCAAACTGGTACACTTGTGACAAATTTACCCCAAACTATTTTTTTGACCATGAAAAACCCCAAACTGGTATATCTGTGACAAATTTACCCCGA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAGAAAAAA                  C                                                     G                       G                 CTGACTATAAAAAACCCTAA            ATG       -    CCAAACTAATTTATTCGACTGCAAAAAACCCCAAAATGGTAAATTTGTGACAAATATACCCTATGCTAAATTGGATTAATACCATAAAAAAATCACAAAAATTGTA
         GGGTTAATACCCTGAAAA CCCCAAACTGGTACACTTGTGACAAATTTACCCCAAACTATTTTTTTGACCAT AAAAACCCCAAACTGGTATATCT TGACAAATTTACCCCGA                    ACTGGTACATTT   ACAAATT TACC                                                                                                          
         |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||                    ||||||||||||   ||||||| ||||                                                                                                           
         CCCAATTATGGGACTTTT GGGGTTTGACCATGTGAATACTGTTTAAATGGGGTTTGATAAAAAAACTGGTA TTTTTGGGGTTTGACCATATGGA ACTGTTTAAATGGGGTT                    TGATCATGTGAA   CTGTTTA ATGG                                                                                                          
AAAAAAGAA                  T                                                     G                       A                 --------------------            -CA       A    GATACAATCAAAAGCAATTTAAAATAAGAGTTTAATAATTTAATTTACTGTGCACTGTCAACTAACCATATGTTTAAATACTAAAATACGAGGCAAACAGTAGCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3