SE4620007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3258
  • Eucalyptus grandis
  • SE4620007
  • Mutator
  • M1
  • scaffold_9:817501-818030
  • TTAAACTAA
  • TAAGGGTTAATACCCTGAAAAACTTTAAACCGGTACACTTGTGACAAATTTACCCCAAACTATTTTTTTGACCATGAAAAACCCCAAACCGGTATACTTGTGGCAAATTTACCCCGA

Secondary structure and sequence

TSD    TIR
5'



3'
TTAAAC             C                C    C                                       G        C    C         G                 CTGACTATAAAAAACCCTAA       C    A              - -----------------ATACTAA     TCGACTGTAAAAAACCCCAAAATGGTACATTTGTGACAAATATACCCTATACTAAATTGAATTAATATCACAAAAAAATCACA
      TAAGGGTTAATAC CTGAAAAACTTTAAAC GGTA ACTTGTGACAAATTTACCCCAAACTATTTTTTTGACCAT AAAAACCC AAAC GGTATACTT TGGCAAATTTACCCCGA                    ACTGGTA ATTT TGACAAATTTACCC C                        TTTAT                                                                                   
      ||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||                    ||||||| |||| |||||||||||||| |                        |||||                                                                                    
      ATTCCCAATTATG GATTTTTTGGGATTTG CCAT TGAACACTGTTTAAATGGGGTTTGATAAAAAAACTGGTG TTTTTGGG TTTG CTATATGAA ACTGTTTAAATGGGGTT                    TGGCCAT TGAA ACTGTTTAAATGGG G                        GAGTT                                                                                   
AATCAA             T                A    A                                       G        A    A         A                 --------------------       A    C              A ACAATCAAAAGCAATTTAAAATAA     TAATAATTCAATTTACTGTGCACTGTTAACTGGCCATATGATTAAATACTAAAATACGAGGCAAACAGTGTCAAATGTTAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End