SE4620008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3259
  • Eucalyptus grandis
  • SE4620008
  • Mutator
  • M2
  • scaffold_5:34893683-34894076
  • TTAAAAAAA
  • AAGGGATAAGTGCATTAGAAGTCCTAAAACTTATCATGAAAATGCAATTGAGTCCTAAAACTTTCAAAAAGTGAAATTAAGTCATAAAACTTATTACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAAAA                      C      C  A                    CCT                 A        CA        A      AAGTTCAATCAAGTCCTAAAATTTTTAAAATG    ATA   - CCTAAAACTTATCTGGAAAGTGCAACTGAGTCCTAAAACTTTCAAAAAGTGCAATCAATGAAAGG
       AAGGGATAAGTGCATTAGAAGT CTAAAA TT TCATGAAAATGCAATTGAGT   AAAACTTTCAAAAAGTG AATTAAGT  TAAAACTT TTACAA                                TTCA   AAG T                                                                 
       |||||||||||||||||||||| |||||| || ||||||||||||||||||||   ||||||||||||||||| ||||||||  |||||||| ||||||                                ||||   ||| |                                                                  
       TTCCCTATTCACGTAATCTTCA GATTTT AA AGTACTTTTACGTTAATTCA   TTTTGAAAGTTTTTCAC TTAATTCA  ATTTTGAA AGTGTT                                TCAC   GTT A                                                                 
AAAAAAA                      A      A  C                    AAC                 G        AG        C      --------------------------------    ---   A GTCAGGATTTTGAAAGTTTTTTACGTTAGTTAAAGATTTTGAATAATTTTACCAAGTTAGATTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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