Plant MITE

SE4650009

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3260
Eucalyptus grandis
SE4650009
PIF/harbinger
To5
scaffold_37:70533-71071
AAT
G

Secondary structure and sequence

TSD TIR

5'

3'

AAT     -    -- GG       TTTGCAATGGACTTTGAGTCCAATGCAAATGCTGAAAGCCCAAAGCTATTTGGGGGAAATGCAGTTGTGTTTGGTAAAAAAATTTTGCAAATGGACTTTGAGTTAAATATGCGTTTGGTAAAAAAAGCTTTTGGAAGGGGCTTTGATGGGTATTGTATATATATATTTTTTTTTCTTTTTTCTTTTTTTTTGAAAAATTAGCTAAACCCTTCGCCGGACCGGCGAAGGGCTGCTGCTTTTTAATTTAA
   GGCTG CGTT  T  TTCGGCA                                                                                                                                                                                                                                                        
   ||||| ||||  |  |||||||                                                                                                                                                                                                                                                         
   AACCC CGCA  C  CTACCCG                                                                                                                                                                                                                                                        
  T     A    AA --       TAAATCTTTCGGGTAGGTGCGGGGTTTCGAGAAAGTGGGTTTTTACCCCACAAACCGTTAGAGGAACTTCCTCGAAAGTTTACTTTCGGAGAGGAACCTTTACGACTTTCGAGTTCCGACCACCTCTGGTCGGAACTCGGAAGTCGTAAAAGCCTTACGACTCCAAGGTAAATTACTTTCAAAATAAAGGATAAGATGGGGGTTTTGAAAAAACTTTTGGGTGGCTACGGGGACGTAAATAAATAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4650009

AATGGCTGCGTTTGGTTCGGCATTTGCAATGGACTTTGAGTCCAATGCAAATGCTGAAAGCCCAAAGCTATTTGGGGGAAATGCAGTTGTGTTTGGTAAAAAAATTTTGCAAATGGACTTTGAGTTAAATATGCGTTTGGTAAAAAAAGCTTTTGGAAGGGGCTTTGATGGGTATTGTATATATATATTTTTTTTTCTTTTTTCTTTTTTTTTGAAAAATTAGCTAAACCCTTCGCCGGACCGGCGAAGGGCTGCTGCTTTTTAATTTAAAAAATAAATAAATGCAGGGGCATCGGTGGGTTTTCAAAAAAGTTTTGGGGGTAGAATAGGAAATAAAACTTTCATTAAATGGAACCTCAGCATTCCGAAAATGCTGAAGGCTCAAGGCTGGTCTCCACCAGCCTTGAGCTTTCAGCATTTCCAAGGAGAGGCTTTCATTTGAAAGCTCCTTCAAGGAGATTGCCAAACACCCCATTTTTGGGTGAAAGAGCTTTGGGGCGTGGATGGGCTTTCTAAATGCCCATCCAAACGCACCCAAT

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