Plant MITE

SE4620011

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3262
Eucalyptus grandis
SE4620011
Mutator
M1
scaffold_5:9939749-9940277
TTATTATTA
AGGGTTAATACCCTGAAAAATCCCAAACTGTACACTTGTGACAAATTTACTCCAAACTATTTTTTTTACCACCAAAAACCTCAAACTGGTATATGTTTGACAAATTTACCCCAAACTG

Secondary structure and sequence

TSD TIR

5'

3'

TTATTATT                              -                      C             T    CC                     G T               AA    --     C TGTGACAAATTTACCCTTTGCTAGTTTTCGTTAAATTTTATTATCAAATTATTAAGTTAAATGACACGTGACAATTGACTAGTATACCAATTTGAGATTTTATGATCCATTTGTCAGAGTTTACAATTTTT
        AGGGTTAATACCCTGAAAAATCCCAAACTG TACACTTGTGACAAATTTACTC AAACTATTTTTTT ACCA  AAAAACCTCAAACTGGTATAT T TGACAAATTTACCCC  ACTG  GTACA T                                                                                                                                   
        |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||  ||||||||||||||||||||| | |||||||||||||||  ||||  ||||| |                                                                                                                                    
        TCCCAATTATGGGACTTTTTGGGGTTTGAC ATGTGAATACTGTTTAAATGGG TTTGATAAAAAAA TGGT  TTTTTGGGGTTTGACCATGTG A ACTGTTTAAATGGGG  TGAC  GTATT T                                                                                                                                   
ATTATTAT                              C                      T             C    AC                     G C               -C    TG     - TTTGGGATATAAACATGTAAATACTGTTTAAATGGGGTTTGATTAAATAAGCTGGCGTTTTTTGGGGTTTGACTATTTAAACACTGTTTATATGGTAAGGGATTTAAACTAATTATGGTATTTTTTTAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4620011

TTATTATTAGGGTTAATACCCTGAAAAATCCCAAACTGTACACTTGTGACAAATTTACTCCAAACTATTTTTTTTACCACCAAAAACCTCAAACTGGTATATGTTTGACAAATTTACCCCAAACTGGTACACTTGTGACAAATTTACCCTTTGCTAGTTTTCGTTAAATTTTATTATCAAATTATTAAGTTAAATGACACGTGACAATTGACTAGTATACCAATTTGAGATTTTATGATCCATTTGTCAGAGTTTACAATTTTTATGATTTTTTTATGGTATTAATCAAATTTAGGGAATGGTATATTTGTCACAAATTTATCAGTTTGGGGTTTTTTGCGGTCGAATAAATTAGTTTGGGGTAAATTTGTCATAAATGTACAAATATAGGGTTTTTTATGGTCAGTCGGGGTAAATTTGTCACAGGTGTACCAGTTTGGGGTTTTTCATGGTCAAAAAAATAGTTTTGGGTAAATTTGTCATAAGTGTACCAGTTTGGGGTTTTTCAGGGTATTAACCCTTATTATTA

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