SE4620012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3263
  • Eucalyptus grandis
  • SE4620012
  • Mutator
  • M5
  • scaffold_3:30888474-30889237
  • TAGAATTTC
  • GAATTTCCGGGTTAATTCCAAAAAAAAACACCAACTTTAGGTCGATAGACAAATCTGGCCCAAACTTTTTTTTGTCTCGTAAAAAAGCACCAACTTTAGGTCAATGGACAAATTTGGCCCAAACTCTTTTTTGTCTCGTAAAAAAGCACAAACCTTAGGTCGAGTGACAATTTTGGCCCAAATTTTTTTTTGTTTGGAAAAAAAATCATTAACT

Secondary structure and sequence

TSD    TIR
5'



3'
TA   T   -C            A      A  C               A             C                   A         C           AAT               A    C                    C      C      C           T      AA      -        G -      AAT  TT          TAAATTCTAAATC      CCCTTAACTTATATTCATTGATTGTCCTTAATCTATGCGCACTTGTTGGCTAACACCATCCATTTTCTTCTTGTTTGAGCCATAGCTTGAAGAATAACAGTGAAACTATGCCATTTCCTATACTTCACTAGCAAGTAAAAAAATCT
  GAA TTC  GGGTTAATTCCA AAAAAA CA CAACTTTAGGTCGAT GACAAATCTGGCC AAACTTTTTTTTGTCTCGT AAAAAGCAC AACTTTAGGTC   GGACAAATTTGGCCC AACT TTTTTTGTCTCGTAAAAAAG ACAAAC TTAGGT GAGTGACAATT TGGCCC  ATTTTT TTTTGTTT G AAAAAA   CA  AACTTTCACT             TGGCCA                                                                                                                                                  
  ||| |||  |||||||||||| |||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||   ||||||||||||||| |||| |||||||||||||||||||| |||||| |||||| ||||||||||| ||||||  |||||| |||||||| | ||||||   ||  ||||||||||             ||||||                                                                                                                                                   
  CTT AAG  CCCGATTAAGGT TTTTTT GT GTTGAAATCCAGCTA CTGTTTAGACCGG TTTGAAAAAAAACAGAGTA TTTTTCGTG TTGAAATCCAG   CCTGTTTAGACCGGG TTGA AAAAAACAGAGCATTTTTTC TGTTTG AATCCA TTCACTGTTAA ACCGGG  TAAAAA AAAACAGA T TTTTTT   GT  TTGGGGATGT             ATTGAA                                                                                                                                                  
 C   T   AT            A      C  A               C             T                   C         T           GTT               C    A                    A      A      A           T      -G      C        G A      ATT  TT          -----------TA      AAATAAACTTCAATTGGAATAAAGTTCTCTTTTCCAAGATCGACACTCCAACCACCTAGAGTAAGTACCAAAGAGAACTGTCCGCCACTAGATGTCAAAGTATAATGCTGTTTTGTTATTTCAGATCGCTCTCTTTAAGTTAGCCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End