SE4620017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3268
  • Eucalyptus grandis
  • SE4620017
  • Mutator
  • M8
  • scaffold_10:33950044-33950456
  • CTATTCTAT
  • GGGGTTAATTGTCCAAAAAGT

Secondary structure and sequence

TSD    TIR
5'



3'
CTATTCTAT    TT         A     CTTA          TCAT   CCC     A  C   A         T   C      --------------CA  A        C    A        C        GTCTCA -   GGTCCTAAACATTTTTTAAATTTGACAGTTTAGTCATAAACTGATTATTTGAATAATTGGCTAGAATGA
         GGGG  AATTGTCCA AAAGT    AACCTATTGT    CGG   ATTTA TC TAA CCTTTCGGT ATG TAATTT                AC ATTTGCCA TTTA TCTTAAAC TTTCGATT      A TTT                                                                     
         ||||  ||||||||| |||||    ||||||||||    |||   ||||| || ||| ||||||||| ||| ||||||                || |||||||| |||| |||||||| ||||||||      | |||                                                                      
         CCCC  TTAACAGGT TTTCA    TTGGATAACA    GTT   TAAGT AG ATT GGAAAGTTA TAT GTTAAA                TG TAAGCGGT AAAT AGGATTTG AAAGTTAA      T TGG                                                                     
GCATCTTAT    TT         C     ACAC          TATT   AAT     C  T   C         T   A      TCATTATTTAAAAAAC  C        T    C        A        ------ G   TAAAATTCGGAATTGTTAAAATACTAAACAATTAAATCAGGGTTTGGAAAATTATTAAACAGTTAAATC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End