SE4620020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3271
  • Eucalyptus grandis
  • SE4620020
  • Mutator
  • M9
  • scaffold_10:1057023-1057532
  • TTTCTTTTT
  • GGGAAAAAGCCACCAAAAACCCCAAACTTTATCTCGAGTGACAGATTTACCCCGAACTTTGTTTTGTGATGTAAAAAATCCCGAAGTTTGCTAATTGTGACACATTTACCCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTCTTTTT                      CA      A                 A                       A           A                            -----TTAAG   -     CG  TTATTATTTCTGTTTTTTCTTTTTAGGGGTGCCCTCGCCAGATTTGGCGAGGGAGGCCCTCGCCGGACGCCGGCTTCCCTCCGCCGGCTCCGCCATGGCCGGCGGAGGGAAGGA
         GGGAAAAAGCCACCAAAAACCC  AACTTT TCTCGAGTGACAGATTT CCCCGAACTTTGTTTTGTGATGT AAAAATCCCGA GTTTGCTAATTGTGACACATTTACCCCA          GGT ATTTT  TC                                                                                                                  
         ||||||||||||||||||||||  |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||          ||| |||||  ||                                                                                                                   
         CCCTTTTTCGGTGGTTTTTGGG  TTGAAA GGAGCTCACTGTCTAAA GGGGCTTGAAACAAAACACTGCA TTTTTGGGGTT CAAACGATTGACACTGTGTAAATGGGGT          ACA TGTGT  TT                                                                                                                  
TTTTTCTTT                      AG      C                 C                       C           C                            TTGAAAATAA   C     --  TTTAGGACTTAAAAATAAATACACTGTATAAATGGGATTTAGTATTCCCGTAAAACCATAAAAATGAAAATTTTTGAAAAAAAGAAAAAAAAAAGGAAAAAAAGAAGAAGAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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