SE4620021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3272
  • Eucalyptus grandis
  • SE4620021
  • Mutator
  • M6
  • scaffold_4:6933649-6934154
  • CTTGGCTTG
  • CTTGGCTTGGGGGATAAGTATACTAGAAGTGCCAAAAGTTGTGTACGACGCTCACTTTAGTACCAAAAGTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
  T    -T     A        C                        A             A           CGCTAGCTC   T        --------AATCAGA             C  T         -  --- A   AATTCTGGCCAAACTGATTACGTGTCATTTATAATTAAAATTTTAATATGACTTGGCAAAATTTTGGCACTTAAATGATCACTTTTAATAAAATTTGGCACTTAAATGGTCAC
CT GGCT  GGGGG TAAGTATA TAGAAGTGCCAAAAGTTGTGTACG CGCTCACTTTAGT CCAAAAGTTTT         ACT AAGTGCTA               GGAAAAACGGTCA TT AGTGTCAAC GG   C AGA                                                                                                                 
|| ||||  ||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||         ||| ||||||||               ||||||||||||| || ||||||||| ||   | |||                                                                                                                 T
GA TCGG  CCCCC ATTCATGT ATCTTCACGGTTTTCAACACATGC GCGAGTGAAATCA GGTTTTCAAAG         TGA TTCACGAT               TTTTTTTGCTAGT AA TCACAGTTG GG   A GCC                                                                                                                 
  T    TT     -        A                        C             C           AAAGCCCAA   T        GAAAATATATTATTA             A  T         A  CCA -   TGACGACCTTTAGGCTGCACCAATATAAAATAATTAAAGAGTTAGGATGTACCGAGTGGTCACACGGATCAGTCGTATATTGGGAATTTGCTGCAACAGGTTTTCAATATTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End