SE4620024

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3275
  • Eucalyptus grandis
  • SE4620024
  • Mutator
  • M6
  • scaffold_4:22317864-22318420
  • TTATATATG
  • TATATATGGGGGTAAGTACACTAGAAGTTTCAAAAGTTGTATACGGCGCTCACTTTAGTGCCAAAAGTTTTTTCCGGATCACTTAAGTGCTACTTTAAAAAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
T        -                    T           A                               T    A              CT  A   A     AAAAAAC      A         ------------      CCAGATTGCCGGAAATCCGACATGGCTATATTTTATTAATTTCTCAATCCTACGTGGCTCACCAGCATACCTAGTAAACATATATCCCCTAAATGATATCGTCCAAAAGTTATAAATAGTGATCATTTGAATGCCAAA
 TATATATG GGGGTAAGTACACTAGAAGT TCAAAAGTTGT TACGGCGCTCACTTTAGTGCCAAAAGTTTTT CCGG TCACTTAAGTGCTA  TT AAA AAAAA       TCATTT AGTGTCAAC            TCCGGT                                                                                                                                          
 |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||  || ||| |||||       |||||| |||||||||            ||||||                                                                                                                                          T
 GTATATAT CCCTATTCATGTGATCTTCA GGTTTTCAACA ATGCTGTGAGTGAAATCACGGTTTTCAAAAG GGCC AGTGAATTCACGAT  AG TTT TTTTT       AGTGAA TCACAGTTG            ACCGAT                                                                                                                                          
         T                    C           A                               C    G              TT  C   C     ----GCT      A         CCGCTCTTTAAG      TTGACTAATGCACAGTAAATATTAATTTTAATATTATACTGAATTGTTTTAAAAATTTTTTAGGTCAGGTGCACCGTACGAACCGTTACTTCACTAACAGAAAATTGTTGACCGTAACTTCACTAGTCAAATTTATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End