SE4650028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3279
  • Eucalyptus grandis
  • SE4650028
  • PIF/harbinger
  • To8
  • scaffold_8:42375938-42376413
  • TTA
  • AGGCTGCGTTTGGTAGTCCGGATTTGAATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              A        TTG        -        TTTGTTATCCTATCCGATGTTTGGGAATGTCCACCGGATCGAACAAACCTCGATATATCCGGATAAAACACTGGATAAAAAATCCGGGGGAGGGGGTGGGATAAGCCCGGATTGGATAAGATTTTTTTTTTTAAGGAAAGAAAGAACTTAACAAAAAGAGAAGATATCACTTGCCGTTTTCAATGGTGGCCAC
  AGGCTGCGTTTGGT GTCCGGAT   AATCCGGA TAGGATAA                                                                                                                                                                                                 
  |||||||||||||| ||||||||   |||||||| ||||||||                                                                                                                                                                                                 T
  TCCGATGCAAACCA CAGGCCTA   TTAGTTCT TCCTATCC                                                                                                                                                                                                 
AT              G        TTA        A        TATTTCATCCTATATATTAGTAAACCTATTATTTCTGCCTGTATAGATTAGGATAGTTCACAAACCACGTGAAGTCCTATTCTAATTTTTTATTTATACTATAAGTAAATTTAATATTTTAATTTTTTATCTTTTAAGTTAATTAATTTCCGGTACCTTCTTGGGATCTAGATCCTTAACACCGGTGGAGGCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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