SE4630029

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3280
  • Eucalyptus grandis
  • SE4630029
  • hAT
  • Hat1
  • scaffold_1:30845114-30845833
  • CTTCTCGT
  • C

Secondary structure and sequence

TSD    TIR
5'



3' 
          CTCGTCTATGAAGAACCGACACTTTCCAAGAGCCTTCGTGTCGTGTCGGACACTTCGACATGTGTCCGACACTCTCTGACACTTGGTCAACGCGTATCAGAAAATCTGACAACTGGTCAACTTTCTCAACACTCTTTGACACTCGAGTTGGAATTCTGACATATGAGTTTTCGACACGTGATTTCAATATCGAGATTAATTTTAAAAATTCAATAAATGAGATGTCAATGTGTGTGTGTGAAAAAATAAAATACAATAATGAAAATAATAAATGGAGAAAGAAGAAAAATCTAGTTTTCTCCTCTTCTGACTCCTATTTCCCGTAATACACAATTTACTCCTTAAGTTTTCTT
       CTT                                                                                                                                                                                                                                                                                                                                                                 
       |||                                                                                                                                                                                                                                                                                                                                                                 T
       CGA                                                                                                                                                                                                                                                                                                                                                                 
TGCTCTT   TTCATCGTGGCTGTGACTGTGCACTCTGCACTGTGCTGTGCTGTGCTGTGCGATTGTACAGCAAAAACTTTTCAGTCTCTTAAGGCTGTACAACCCTGTGCAATATATAATTTATATATAAAAATATATTAATAGTAAAAATACTAATAAAGTTAGTTTAAGTATTTATTTATTTATTTATTTATTTATTCGGAAATTACTTATATATGATTTTTGTAATTAGGCAGTAAATAATTATAGTAAGTAACAAAATTAAACTGTTTAAGTTGAGATAAAGTTATTAAGTATTTTGAACCTCTTTTTTGTTCGCTAGGTATAAGACCTGAGCGCACAATCTATATAACCTTCTCCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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