SE4650031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3282
  • Eucalyptus grandis
  • SE4650031
  • PIF/harbinger
  • To1
  • scaffold_65:63048-63306
  • TTA
  • AGGCTGCGCATGATAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C             ATTTATGTTTCTT    TC               CCGGAACAGGTTTGGAACAGAAATCCGTTTGGTAACGCAATTTGATTTCTCTATTTCTGAAACAGATTTCTATTCCAGAAATAG
  AGG TGCGCATGATAAA             GATT  TCTGTTTCTCTGTTC                                                                                    
  ||| |||||||||||||             ||||  |||||||||||||||                                                                                     
  TCC ACGCGTACTGTTT             TAAA  GACTTTGTCTTTAAC                                                                                    
AT   C             -------------    --               TAAAGACCGGTCTTTAACTAAAGAGTTAAAGATAAAGTCTTTGACTCTTCGATTTTCAAAATCGAAGACTAAAGAAGAAGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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