SE4620033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3284
  • Eucalyptus grandis
  • SE4620033
  • Mutator
  • M2
  • scaffold_11:43646084-43646477
  • ATATTTAAT
  • ATGGGATAAGTGCATTCGAAGTCCTAAAATTTGTCATGAAAATACAATTAAGTCTTAAAACTTTCAAAAAGTGCAATTAAGTCCTAAAACTTGTCATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATTTA            C   C                          AC                                                      ---     -    A  T          TCAAAAAGTGCAATCAAGTCATAAAACTTATCAAAATTGTTCAATTTAAGTCATTCCATTGATTGCA
       ATGGGATAAGTG ATT GAAGTCCTAAAATTTGTCATGAAAAT  AATTAAGTCTTAAAACTTTCAAAAAGTGCAATTAAGTCCTAAAACTTGTCATAA   AGTGT AATT AG TCTAAAACTT                                                                   
       |||||||||||| ||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| |||| || ||||||||||                                                                    
       TACCCTATTCAT TAA CTTCAGGATTTTGAATAGTACTTTTA  TTAATTCAGAATTTTGAAAGTTTTTCACGTTAATTCAGGATTTTGAATAGTGTT   AAGTT GTTC AG GATTTTGAAA                                                                   
TAATTTA            A   C                          CA                                                      TTC     A    -  -          ATTTTCCAAGTTATTTCAGGATTTTGAACAGAACTTTCACGTTAGCTCTGGATTTTGAAAGTTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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