SE4620034

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3285
  • Eucalyptus grandis
  • SE4620034
  • Mutator
  • M1
  • scaffold_16:761904-762435
  • TTTTTATTA
  • AGGGTTAATACCCTGAAAAACCCTATACTGGTACACTTGTGACAAATTTACCCCAAACTATTTTTTTGACCACCAAAAACCCCAAACTGGTATACCTTTGACAAATTTACCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTATT                     C   T                           C                  CC                  TAC  T               -----AAAC     CACTTGTGACAAATTTACCCTATGTTAGTTTTCGTTAAATTTTATTCTCAAATTATTAAGTTAAATGACACGTGACAGTTAACCGGTATACCAATTTAGGATTTTACGCTCCGTTTGTCATAATTTACAATTT
        AGGGTTAATACCCTGAAAAAC CTA ACTGGTACACTTGTGACAAATTTACCC AAACTATTTTTTTGACCA  AAAAACCCCAAACTGGTA   CT TGACAAATTTACCCC         TGGTA                                                                                                                                     
        ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||   || |||||||||||||||         |||||                                                                                                                                     T
        TCCCAATTATGGGACTTTTTG GGT TGATCATGTGAACACTGTTTAAATGGG TTTGATAAAAAAATTGGT  TTTTTGGGGTTTGATCAT   GA ACTGTTTAAATGGGG         ATTTT                                                                                                                                     
ATTATTTT                     A   T                           T                  AT                  TTA  C               CTGACTGAT     TTTTGGGATTTAACCATGTAAATACTGTTTAAATGGGGTTTGATTAAATAAGCTGATGTTTTTTGGGATTTGACCATTTAAACACTGTTTATATGGGAGACGATTTAACCTAATTATGGTGTTTTTTTAGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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