Plant MITE

SE4620036

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3287
Eucalyptus grandis
SE4620036
Mutator
M1
scaffold_8:71489193-71489724
ATTGATTTA
GGGTTAATACCCTGAAAAACCCCCAAACTGGTACACTTGTGACAAATTTACCGCAAACTATTTTTTTTACCATGAAAAAGCAAAAACTGGTAAACTTGTGACAAATTTACCCCGA

Secondary structure and sequence

TSD TIR

5'

3'

ATTGATTTA                       C                            G              T     G    AG AA      G  A    G                 CTGACTATAAAAAAAATCCTAA            A              CAAACTAATTTATTCGACTGCAAAAAAC     ACTAGTAAATTTGTAACAAATATACCCTATGCTAAATTGGATTAATACCACAAAAAAATCATAAAAATTGTAA
         GGGTTAATACCCTGAAAAACCCC AAACTGGTACACTTGTGACAAATTTACC CAAACTATTTTTTT ACCAT AAAA  C  AAACTG TA ACTT TGACAAATTTACCCCGA                      ATTGGTACATTT TGACAAATTTACCC                            TCTAA                                                                         
         ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||  |  |||||| || |||| |||||||||||||||||                      |||||||||||| ||||||||||||||                            |||||                                                                          
         CCCAATTATGGGACTTTTTGGGG TTTGACCATGTGAACACTGTTTAAATGG GTTTGATAAAAAAA TGGTG TTTT  G  TTTGAC AT TGGA ACTGTTTAAATGGGGTT                      TGACCATGTGAA ACTGTTTAAATGGG                            GAGTT                                                                         
ATTTAGTTA                       -                            G              C     G    -G GG      A  A    A                 ----------------------            C              --ATACAATCAAAAACAATTTAAAATAA     TAATAATTCAATTTATTGTGCACTGTCAATTGGCCATATGGTTAAATCCTAAAATGCGAGGCAAACAGTGTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4620036

ATTGATTTAGGGTTAATACCCTGAAAAACCCCCAAACTGGTACACTTGTGACAAATTTACCGCAAACTATTTTTTTTACCATGAAAAAGCAAAAACTGGTAAACTTGTGACAAATTTACCCCGACTGACTATAAAAAAAATCCTAAATTGGTACATTTATGACAAATTTACCCCAAACTAATTTATTCGACTGCAAAAAACTCTAAACTAGTAAATTTGTAACAAATATACCCTATGCTAAATTGGATTAATACCACAAAAAAATCATAAAAATTGTAAACTGTGACAAACGGAGCGTAAAATCCTAAATTGGTATACCGGTTAACTGTCACGTGTTATTTAACTTAATAATTTGAGAATAAAATTTAACAAAAACTAACATAGGGTAAATTTGTCACAAGTGTACCAGTTTGGGGTAAATTTGTCAAAGGTATAACAGTTTGGGGTTTTGGTGGTCAAAAAAATAGTTTGGGGTAAATTTGTCACAAGTGTACCAGTTTGGGGTTTTTCAGGGTATTAACCCATTGATTTA

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