SE4650037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3288
  • Eucalyptus grandis
  • SE4650037
  • PIF/harbinger
  • To10
  • scaffold_9:7945007-7945505
  • TCA
  • GGCTGCATTTGGTTCAGTTTTGGAAATGGGTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TCA  C                  GGA  T       GG     --  CAAATATTTTTGGCCTAAAGGGCTTTGGGGAAGTGCAAATTACATTTGGTTAAAAATTCTTTGCAAAGCTATTTTGACTTAAAGAGTGTTTGGCAAATGTTTTTATTTATTTATTTATAAAGAGTTTTTGAATTACCTTTTTCTTTTTTATTAAATAATATTAAACTCTTTGTCAACTCTAGTGAAGGTAAGGGTAGTTTTGG
    GG TGCATTTGGTTCAGTTTT   AA GGGTTTT  AGAAA  TG                                                                                                                                                                                                           
    || ||||||||||||||||||   || |||||||  |||||  ||                                                                                                                                                                                                           A
    CT ACGTAAACCAAGTTGAAA   TT TCCAAAG  TCGGA  TT                                                                                                                                                                                                           
ACTA  -                  GGG  C       --     GG  TCGGGAAACCCCTTTACATCCCCACAAATCGTTCTGACAGGTTCCTCGAAAGGCAGTTTACGATTGGAAGCTTTTTCGACTTTCGAGTTACGGCTATCCCTAATCGAAACTCGAAAGTCATAAAACGGTTTACGATTTTGATGAAAAAAAAAAGTTTTAATGATAGTATTAAAAAAATCAAAAAGCAAAAATAGAGAGTAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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