Plant MITE

SE4650038

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3289
Eucalyptus grandis
SE4650038
PIF/harbinger
To11
scaffold_3:25826412-25827032
TTA
AGGGTCCGTTCGTTTTGCGGAAAATGG

Secondary structure and sequence

TSD TIR

5'

3'

TT   G                       GCAA    C    AATATTTTTCCAGAAGTCATTTTCTAGAAAAAAGGACAATATTTTATGGTGTTCGGCTAAAACTCAAAAATGTTTCGGAAAATATTTTGTAAGGAAAATATTTTCCGCTCGCCAGATTGGCGAGCGCGAGCGTCAAGCTCAAGGCTCGCCAGATTGACGAGCACGAGTTTGAGATTGATGAGCTTGAGGTTCACCTGGTCCGACGACTAGTCAAGATAGAAGAAGATGGGAAACAAAGAAAAGAAAAAAAAAAACAGAAGAAAAGAAAA
  AGG TCCGTTCGTTTTGCGGAAAATGG    TTTC AGAA                                                                                                                                                                                                                                                                             
  ||| |||||||||||||||||||||||    |||| ||||                                                                                                                                                                                                                                                                             A
  TCC AGGCAAGCAAAACGCCTTTTATT    AGCC CTTT                                                                                                                                                                                                                                                                             
AT   G                       -GAA    -    TGCAAAGGGCTTAAAAGACCACAAGCAAAGTGTTTTTTACTTAAGTAAGCCCTTTTACAAAAGGTAGCTTCCTTTTTTCAGAAGATTTCATTCCCTTTTACAAAAAGTGAAAAGTTAAAGGTAAAAACTTTTCATTTTTTGTAAAATACATGAACTAGAGAGAATAGAGTGTGGAGATGTTTAGGAATGAAGGAGAAGGGGAAAGAAGAAGAATAAAAGAAAAAATTAAGTTTAATAAAAATTAAAGGAAAAAGAAAAGAAAAAGAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4650038

TTAGGGTCCGTTCGTTTTGCGGAAAATGGGCAATTTCCAGAAAATATTTTTCCAGAAGTCATTTTCTAGAAAAAAGGACAATATTTTATGGTGTTCGGCTAAAACTCAAAAATGTTTCGGAAAATATTTTGTAAGGAAAATATTTTCCGCTCGCCAGATTGGCGAGCGCGAGCGTCAAGCTCAAGGCTCGCCAGATTGACGAGCACGAGTTTGAGATTGATGAGCTTGAGGTTCACCTGGTCCGACGACTAGTCAAGATAGAAGAAGATGGGAAACAAAGAAAAGAAAAAAAAAAACAGAAGAAAAGAAAAAATAAGAAAAAGAAAAGAAAAAGGAAATTAAAAATAATTTGAATTAAAAAAGAAAATAAGAAGAAGAAAGGGGAAGAGGAAGTAAGGATTTGTAGAGGTGTGAGATAAGAGAGATCAAGTACATAAAATGTTTTTTACTTTTCAAAAATGGAAATTGAAAAGTGAAAAACATTTTCCCTTACTTTAGAAGACTTTTTTCCTTCGATGGAAAACATTTTCCCGAATGAATTCATTTTTTGTGAAACGAACACCAGAAAATTCGGGAAACGTTTTCCCGAAAGTTATTTTCCGCAAAACGAACGGAGCCTTA

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