Plant MITE

SE4620040

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3291
Eucalyptus grandis
SE4620040
Mutator
M1
scaffold_5:9151661-9152190
TTACGAAAA
AAGGGTTAATACCCTAAAAAACCCCAAACTGGTACACTTGTGACAAATTTACCCCTAACTATTTTTTTGACCACCAAAAACCCCAAACTAGTATACCTTTGACAAATTTACCCC

Secondary structure and sequence

TSD TIR

5'

3'

TTACGAA             CTA        C           C                 CT  C              CC              A      CTT                   TGGTACACTTGTGACAAATTTACCCTCTGTTAGTTTTCGTTAAATTTTATTCTCAAATTATTAAGTTAAATGACATGTGACAATTGACCAGTATACAAATTTAGGATTTTATGCTCATTTTGTCACAGTTTACAATTTTT
       AAGGGTTAATACC   AAAAACCC AAACTGGTACA TTGTGACAAATTTACCC  AA TATTTTTTTGACCA  AAAAACCCCAAACT GTATAC   TGACAAATTTACCCCAAAC                                                                                                                                            
       |||||||||||||   |||||||| ||||||||||| |||||||||||||||||  || ||||||||||||||  |||||||||||||| ||||||   |||||||||||||||||||                                                                                                                                             
       TTCCCAATTATGG   TTTTTGGG TTTGACCATGT AACACTGTTTAAATGGG  TT ATAAAAAAACTGGT  TTTTTGGGGTTTGA CATATG   ACTGTTTAAATGGGGCTGA                                                                                                                                            
AAAAGCA             AAC        A           A                 TT  A              AC              C      AAC                   TTGGTATTTTTTAGGATTTGACCATGTAAATACTGTTTAAATGGGTTTTGATTAAATAAGCTGACATTTTTTGGGTTTTTACCATTTAAACACTATTTATATGGGATACGATTTAACCTAATTATAGTGTTTTTTTAGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4620040

TTACGAAAAGGGTTAATACCCTAAAAAACCCCAAACTGGTACACTTGTGACAAATTTACCCCTAACTATTTTTTTGACCACCAAAAACCCCAAACTAGTATACCTTTGACAAATTTACCCCAAACTGGTACACTTGTGACAAATTTACCCTCTGTTAGTTTTCGTTAAATTTTATTCTCAAATTATTAAGTTAAATGACATGTGACAATTGACCAGTATACAAATTTAGGATTTTATGCTCATTTTGTCACAGTTTACAATTTTTGTGATTTTTTTGTGATATTAATCCAATTTAGCATAGGGTATATTTATCACAAATTTACCATTTTTGGGTTTTTTACAGTCGAATAAATTAGTTTTGGGTAAATTTGTCATAAATGTACCAGTTTAGGATTTTTTATGGTTAGTCGGGGTAAATTTGTCACAAGTATACCAGTTTGGGGTTTTTCATGGTCAAAAAAATAATTTTGGGTAAATTTGTCACAAATGTACCAGTTTAGGGTTTTTCAAGGTATTAACCCTTACGAAAA

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