Plant MITE

SE4350001

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3292
Linum usitatissimum
SE4350001
PIF/harbinger
To1
scaffold16:873608-873763
TAA
ATGGTCCGTTTGGCAGATGGAATGTGAGATGGAATCTTGAG

Secondary structure and sequence

TSD TIR

5'

3'

TA              A AT       G         ---CT    ----CA   T  CATTCGAACAAGAAATTTAAATTC
  ATGGTCCGTTTGGC G  GGAATGT AGATGGAAT     TGAG      CTT TT                        
  |||||||||||||| |  ||||||| |||||||||     ||||      ||| ||                         
  TACCAGGCAAACCG C  CCTTACA TTTACTTTA     ACTC      TTT CA                        
AA              C GC       A         AATCT    TTACTC   -  ATCGAAAATTTTACATGAAACAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4350001

TAATGGTCCGTTTGGCAGATGGAATGTGAGATGGAATCTTGAGCACTTTTTCATTCGAACAAGAAATTTAAATTCCAACAAAGTACATTTTAAAAGCTAACTTTCTCATTCTCATCTAAATTTCATTTAACATTCCCGCCGCCAAACGGACCATAA

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