SE4350002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3293
  • Linum usitatissimum
  • SE4350002
  • PIF/harbinger
  • To2
  • scaffold931:335366-335670
  • TAG
  • GCCTATGTTTGGCAACAGAAATCATGATTACTAGGAAAGTTGAATTGAGACTAGTGTAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
 TAG  C            CA A         TA                    C          AAGC      A   TAAAAAAATATTA    T    ACTT   -------------        A  -         AAT     ---TCATG       ATCTA
    GC TATGTTTGGCAA  G AATCATGAT  CTAGGAAAGTTGAATTGAGA TAGTGTAAAG    TGAGTT GAG             TGGA GGAA    GAA             TCAAAGGA AT AAGGATTTC   TGGAA        TTTCCCA     
    || ||||||||||||  | |||||||||  |||||||||||||||||||| ||||||||||    |||||| |||             |||| ||||    |||             |||||||| || |||||||||   |||||        |||||||      
    CG ATACAAACCGTT  C TTAGTACTA  GATTCTTTCAACTTAACTTT ATCATATTTT    ACTCAA CTC             ACCT TCTT    CTT             AGTTTCCT TA TTCCTAAGG   ATCTT        AAAGGGT     
GATA  -            AA C         AG                    -          ACCA      -   -----------CA    T    AACT   TTTCTACAATTTA        A  C         ---     TTCAAATA       ACTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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