SE4320003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3294
  • Linum usitatissimum
  • SE4320003
  • Mutator
  • M1
  • scaffold212:278720-279386
  • AATTTGAAA
  • GGGATTATGGCCAAAATGGCCCCTATACTATTACAAGTTTATAATTGAGCCCCTACTAATTTTCTTTCTAATCAAACCCCTACACTTTTCTCAGGTCATCAAGTAAGCTCCTTTTCTTTTTCTTCCGACAATTGTGATGAATCAACACGTCCAGTTGGACGTTTTGCTGACGTGTCCCTTGTTGACTGAGATTTTTCTATTAATTACTAATTAGGTAGGTTTTAAAATTAACAAAAAAAGATATTACAAAGAGAAAATAGGGTGGGTGAAAAAAGAGTTGTAGGCCGATTAAAATTAAATAATCCATCTCCTAAAAAGGAAT

Secondary structure and sequence

TSD    TIR
5'



3'
AATTTGAAA                                     TTT              --                     A                                             C        A                            C              T C                                                             AG      CAA                 T                                    C         AAA      AAAA
         GGGATTATGGCCAAAATGGCCCCTATACTATTACAAG   ATAATTGAGCCCCT  ACTAATTTTCTTTCTAATCAA CCCCTACACTTTTCTCAGGTCATCAAGTAAGCTCCTTTTCTTTTT TTCCGACA TTGTGATGAATCAACACGTCCAGTTGGA GTTTTGCTGACGTG C CTTGTTGACTGAGATTTTTCTATTAATTACTAATTAGGTAGGTTTTAAAATTAACAAAAAA  ATATTA   AGAGAAAATAGGGTGGG GAAAAAAGAGTTGTAGGCCGATTAAAATTAAATAAT CATCTCCTA   AGGAAT    
         |||||||||||||||||||||||||||||||||||||   ||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||   ||||||     
         CCCTAATACCGGTTTTACCGGGGATATGATAATGTTC   TGTTAACTCGGGGA  TGATTAAAAGAAAGATTAGTT GGGGATGTGAAAAGAGTCCGGTAGTTCATTCGGGGAAAAGAAAAA AAGGCTGT AACACTACTTAGTTGTGCAGGTCAACCT CAAAACGACTGTAC G GAACAACTGACTCTAAAGAGATAATTAATGATTAATCTATCCAAAATTTTAATTGTTTTTT  TATAAT   TCTTTTTTATCCCACCC CTTTTTTCTTAGCATCCGGCTAATTTTAATTTGTTA GTAGAGGAT   TCTTTA    
AAAGTTTAA                                     TAT              AA                     C                                             -        C                            A              C T                                                             -A      ATC                 T                                    A         ---      GACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End