Plant MITE

SE4320004

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3295
Linum usitatissimum
SE4320004
Mutator
M2
scaffold31:1790422-1790961
AATCTAACT
GCTAATCAGGTCAAATGGTCTCTTACGTATCTAGCGAGTTCATTTTAATCCCTTTTGTATCGATTGCAATAAAACTATTCCTCTTGTTTGTTGAAATAACAAT

Secondary structure and sequence

TSD TIR

5'

3'

AATCTAACTCG                     C        C     A   C      A                  C       C     C                      ---TAA   CGAATTTGGCCTTCCGTCGAAACGGACGTTAGTTTGGTCAATGTGGCAGAGCTGAGTCAGCAACATTGGTCAACATGGCACTTTATACCATTTAGCTAGCGGTTCCCCCACTTAAACCGAATGAACCACTACCCAAATCCGTCCACCA
           GCTAATCAGGTCAAATGGTCT TTACGTAT TAGCG GTT ATTTTA TCCCTTTTGTATCGATTG AATAAAA TATTC TCTTGTTTGTTGAAATAACAAT      GCC                                                                                                                                                    
           ||||||||||||||||||||| |||||||| ||||| ||| |||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||      |||                                                                                                                                                    A
           CGATTAGTCTGGTTTACCAGA AATGCATA ATCGC TAA TAAAAT AGGGAAAACATAGCTAAC TTATTTT ATAGG AGAGCAAACAATTTTATTGTTA      GCA                                                                                                                                                    
CTCAATCTAAA                     T        A     C   A      C                  A       A     A                      CATAAA   GATTTGCCGACAATCGAACCAGCTGCACCGTCTCAACTCAGCCGTTGTAGCCAGGCGCACCGTGAAATATGGTGAACCGATCACCAGATTAATACCTTAACAATCCTATATGCTTTACAAATGGTTTTAGGAATAGAAAAGAAGTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4320004

AATCTAACTCGGCTAATCAGGTCAAATGGTCTCTTACGTATCTAGCGAGTTCATTTTAATCCCTTTTGTATCGATTGCAATAAAACTATTCCTCTTGTTTGTTGAAATAACAATTAAGCCCGAATTTGGCCTTCCGTCGAAACGGACGTTAGTTTGGTCAATGTGGCAGAGCTGAGTCAGCAACATTGGTCAACATGGCACTTTATACCATTTAGCTAGCGGTTCCCCCACTTAAACCGAATGAACCACTACCCAAATCCGTCCACCAAAATTGAAGAAAAGATAAGGATTTTGGTAAACATTTCGTATATCCTAACAATTCCATAATTAGACCACTAGCCAAGTGGTATAAAGTGCCACGCGGACCGATGTTGCCGACTCAACTCTGCCACGTCGACCAAGCTAACAGCCGTTTAGACGAAATACATTGTTATTTTAACAAACGAGAAGGATAATTTTATTACAATCGATACAAAAGGGACTAAAATAAATCCGCTAAATACGTAATAGACCATTTGGTCTGATTAGCAAATCTAACTC

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