SE4320007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3298
  • Linum usitatissimum
  • SE4320007
  • Mutator
  • M4
  • scaffold465:667375-668036
  • TGTTATAAT
  • GTTATAATGGTGAATTCTTTAGTATATCTGGTATACCAAAATTTTCGGTGTGC

Secondary structure and sequence

TSD    TIR
5'



3'
T        -                 A           A             G ATAG                            T            A    C     C    A    C                          C              G  C   --TA  --      CAA    A AAAAAA  TTGCTTTCTCAGTTTGACAAAGGAGTTTTAGCAAGCTAAGGCAGCAACTCAGAGAGCAAGAGAGGGAGACGAAGGAAACACAGCTCCGAAAAAAAGCAGCAAGATAACAAAATCCCGGTGCTTCAAAACAAGACTTGG
 GTTATAAT GGTGAATTCTTTAGTAT TCTGGTATACC AAATTTTCGGTGT C    TTTTTTTGGTAACGTAAATTCATCACCA CGTCCATTTTCA TTTG GATCT GACG TTCA AATTATTCAAATATTAAATTTCTATT CACATTTTATTTTT AT TCA    TG  TTTTCT   TTTC C      TC                                                                                                                                          
 |||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |    |||||||||||||||||||||||||||| |||||||||||| |||| ||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||| || |||    ||  ||||||   |||| |      ||                                                                                                                                           
 TAATATTG CCACTTAAGAAGTTATA GGACCATATGG TTTGAAAGCCACA G    AAAAAAACCATTGCATTTAGGTAGTGGT GCAGGTAAAAGT AAAC CTAGA CTGC AAGT TTAATAAGTTTATAATTTAAAGATAA GTGTAAAATAAAAA TA AGT    CG  AGGCTT   TAAC C      TA                                                                                                                                          
         T                 C           C             G GTTA                            T            C    A     A    C    A                          A              G  A   CAAA  CT      ---    - ------  ACATTAACTAGGTTTTAAAGTACACTAAAGTTTATTTTTCAAAGTACACCAAATTAACTTTAACAACCTGGACAAAAAACGACAGTGAAACCCCACGGTATGTACCACAAAACAAACCAAAAAGTCAACGTCTTACAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End