SE4330010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3301
  • Linum usitatissimum
  • SE4330010
  • hAT
  • Hat1
  • scaffold33:1093693-1094334
  • TTGGAAAG
  • AGTAGGGTTGGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGGAA      G        ---CCTGACC  -    CCGTTAAACCGACCATACCCTCACTGAGTTTGACGGTTATTAACCGCGTTGATTGGGTATTTTGCGGTTATGGTTATAACCGTTAACCGCTACGAATGGGTAAGATTAGGTTATGGGTTACGAAGTAACCGCAACATCACCGTAACCATACCCATAACCATCCCCAACCCGTAACTTACCATCTATTTACCCGTACATTATTAAAGCAATAAAGCCTAATACCATTTGGCTGTTCTAATCCACTTACATTTTAACCCTATGTCCCAACACAATACTTTTGATTTT
      AGTAGG TTGGCAAT          GT TTAA                                                                                                                                                                                                                                                                                             
      |||||| ||||||||          || ||||                                                                                                                                                                                                                                                                                              
      TTATCC AACCGTTG          CC CTAC                                                                                                                                                                                                                                                                                             
GAAAGG      G        CCCCTCCAAG  C    CAGTACCGTATAGGTAATGGGTAGGTGGAAGCACCGCCGGTAATTGGTATTGGTAGTGGTAAAGATAAAGCCACTATCTAAAGCAAGATAGGGGTATGGGTGGGTCAATACCAATAATGGCGAGGAGGATTGCCAATTGGTGGCTATATGTTCTTTTTTTTTCCTTACTTTTCAGCTTTTACGTATGTGTAAGTAAGTAGACTTTTAAAAGGTTTAGATTAAGGTTTGTTAACATTGTTATCGTAAGATCTTGTGATTTTCGTGAACACTGAACAAGAACTTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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