SE4350012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3303
  • Linum usitatissimum
  • SE4350012
  • PIF/harbinger
  • To2
  • scaffold184:353777-354080
  • TAA
  • ATGCTATATTTGGCAATAGGAATCATGATTCCTAGGAAAGATGAGTTGAGACTAATGTAAGCAAGTTGAGTTGGAGTAGAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA       A                              A A    TTG   C  A      C            A  -A   AAATATCA    T    ACTT        G         -     AATT    TCA           CTA
  ATGCTAT TTTGGCAATAGGAATCATGATTCCTAGGAA G TGAG   AGA TA TGTAAG AAGTTGAGTTGG GT  GAA        TGAA GGAA    GGATTAAA GATATAAGG ATTCT    GGAA   TGTTTTCCTAT   
  ||||||| |||||||||||||||||||||||||||||| | ||||   ||| || |||||| |||||||||||| ||  |||        |||| ||||    |||||||| ||||||||| |||||    ||||   |||||||||||   C
  TACGATA AAACCGTTATCCTTAGTATTAAGGATCCTT C ACTT   TCT AT ATGTTT TTTAACTCAACT CA  CTT        ACTT TCTT    TTTAGTTT CTATATTCC TAAGG    CCTT   ATAAAAGGGTA   
AA       C                              A -    TAA   T  C      T            C  AC   -CCCTAAC    T    ACAT        A         C     -ATC    CAA           ACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End