SE4320014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3305
  • Linum usitatissimum
  • SE4320014
  • Mutator
  • M4
  • scaffold212:335941-336603
  • CATATCATT
  • GGTGCATTCTTCAGTACAACTGGTATACCGAAACTTTTGGTGTGCCCAGTTTTTTTTGGTAACATAGATCCATCACCAACGTCCATTTTCAGTTTGCGATCTCGACGGTTCATAATTATTCGAATATTAAATTTCTATTTCACATTTTAGTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
CATATCATT    C       A   CA   -      CC                   G      T       A          A   AC  C                                                 T          A     G    GATT      T    -   GAAATTGGATTGTAATTGATCTAAAATTTCATGTGATTTCAAATAAAAAATTTCATGTGGTTTAATTGAAATTGTTGCTGCTGTTTTTTGTTGTCACTTTGGGGTGTCATACATGGTGTTTTGTTTGGTTTTTCAGTTGCAGATTGTCTCAA
         GGTG ATTCTTC GTA  ACT GGTATA  GAAACTTTTGGTGTGCCCA TTTTTT TGGTAAC TAGATCCATC CCA  GT CATTTTCAGTTTGCGATCTCGACGGTTCATAATTATTCGAATATTAAAT TCTATTTCAC TTTTA TTTT    TCAGTT GCGA TCT                                                                                                                                                        
         |||| ||||||| |||  ||| ||||||  ||||||||||||||||||| |||||| ||||||| |||||||||| |||  || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||    |||||| |||| |||                                                                                                                                                         
         CCAC TAAGAAG CAT  TGA CTATAT  CTTTGAAAACCACACGGGT AAAAAA ACCATTG ATTTAGGTAG GGT  CA GTAAAAGTCAAACGCTAGAGCTGCCAAGTGTTAATAAGTTTATAATTTA AGATAAAGTG AAAAT AAAA    TAGAGT ATAC AAA                                                                                                                                                        
TTATTATAC    T       C   -A   A      AT                   -      T       C          C   GA  A                                                 T          A     A    --AA      -    A   GAGTTAAACTATTTCTAGAACGAAAGAGTTAAACTGTTTACTCTAAATCGTTCGATTCCATCGTCGAGTCTCTCATTCTCTCCCTCTACTTCCTTTGTGTTGAGGTTTTTTTATGTCGTTCTATTGTTTTAGAGCCACGAAGTTTTGTTCTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End