SE4350016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3307
  • Linum usitatissimum
  • SE4350016
  • PIF/harbinger
  • To5
  • scaffold612:358917-359071
  • TTA
  • AGGCTTGGTTTGATAGGCAGAAAGTTGGATGGAATCTTGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C        ATA  C          A      ---CT  A  ---        GGTCGAACGGGAAAGTTAGACCA
  AGG TTGGTTTG   GG AGAAAGTTGG TGGAAT     TG GC   ATTTTCCC                       
  ||| ||||||||   || |||||||||| ||||||     || ||   ||||||||                       C
  TCC AACCAAAC   CC TCTTTCAACC ACTTTA     AC CG   TATTTTCA                       
AT   A        -CA  A          G      ATTTT  -  TTA        AGCGAGAAGTTTTAGTGAAGATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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