SE4330018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3309
  • Linum usitatissimum
  • SE4330018
  • hAT
  • Hat4
  • scaffold360:176354-176870
  • TTCACGCT
  • GCTCAGGGGCGGAACCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCAC CT   G          -------------------A    ----   C  --   GGAGTCCCGGCTCACCCCAGTTTCGGTCCGGACCATTACTTTCGGGTGTATATTTACAATTTTTATGAGTTCGGCTCAGGGCAATTTTGAACTAGACTCAGTGTTTGGTCTTGTCGGAACTAGAGGGACCCAGTGAGAGTCCCAACTATCTTGTTTTTTGGTCTCGAGTACTAAATTATATGTAAAGTTTTGATGATTTTTCATAATCCG
     G  CAG GGCGGAACCA                    GGGG    TGG CC  GGG                                                                                                                                                                                                                  
     |  ||| ||||||||||                    ||||    ||| ||  |||                                                                                                                                                                                                                  A
     C  GTT CCGCCTTGGT                    AGCC    CTT AT  TTT                                                                                                                                                                                                                  
TCGTA TT   A          CCTACTTTTATACGTGATTC    TAAA   -  TT   AATATACACATAGTTCATTAGTGAACTATTTAATTAGGATTATGATTAAATTTTATTTTTTTATAAAGTAACATTACAAAAATCAACTTTTATGTTATATAAACGGTAGTCCCTCAAAAAATAAGATATGAACTTGAAAAACTTCATTTAAAGACTATTAATTAATCAGATTTTTTTATTTATATTCTCGTATTCAAGTTTATGATAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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