SE4330019

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3310
  • Linum usitatissimum
  • SE4330019
  • hAT
  • Hat5
  • scaffold342:594737-594910
  • AACCTAAC
  • CAGGGACGGACCTAGGGGGTGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
AACCTAAC          C      G T   TGTC  A    ACGACCACCAGTCGTTTGTGTCCAGTTCTTTACAAATAGTTAAATTTT
        CAGGGACGGA CTAGGG G GAC    CT GGCC                                                
        |||||||||| |||||| | |||    || ||||                                                 
        GTCCCTGTCT GATCCT C CTG    TA TAAA                                                
CAATCCAA          A      A -   ----  -    AGTTTTATAATGACCCGGTTTTAATTTTGAAAGTGATTTTAATATTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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