SE4330020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3311
  • Linum usitatissimum
  • SE4330020
  • hAT
  • Hat6
  • scaffold87:198542-198923
  • GATTGTAT
  • CAAGGTAGTCGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GATTGTAT         C         --  TTAAATCGCAAAATCGTTCGATTTTATGATTTCACAGTAGGAGTTCGATTTTGATTTCACAGTAAAATCGCTGGACATCAAAATCGTATGAAATCGGGAGGAATAACGGTGAAATCGTAAAATCGTTCGAGGTAAAGTCGTATGCGTAAAATCGTTTGAAA
        CAAGGTAGT GAAATTGCG  AT                                                                                                                                                                 
        ||||||||| |||||||||  ||                                                                                                                                                                 A
        GTTCCATCA CTTTAGTAC  AA                                                                                                                                                                 
TATGTTAG         -         CC  AGCTCATTTTATTTTTTGTACCCATTTTAGCTTTAGCATACTATCTTAGCATTTTAGCATTCTAAAATTAATGGTGGGTATCAACTTTAATTTGTTGATTTTCATGTATCAAATACTATGTTTCGAGTATTTTAGTATTCATGCGTTGTGTTTTATGTGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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