SE4330022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3313
  • Linum usitatissimum
  • SE4330022
  • hAT
  • Hat8
  • scaffold721:300518-301073
  • GTTGGCTC
  • GGCTCCAATGTTCAGGAAGGCGTAAGGCGT

Secondary structure and sequence

TSD    TIR
5'



3'
GTT    --   A    CA         ---A          AGGCGGTGAGGTCTTGCCTCACGCCTTGGATGATTAGGCGTTGCCTAAGCGCGATTAGGCGTTTAGAAAAAATGCATTAGATTTTTGGTTTAGTGTGCAAGATCAAACATAACTATTCATAAGTTCACAGAGTTTTAGTTATGTAACTAACAAAGTTCAAGATAGGCAATGTTCAAGTTCTCATATATAAGAAAACAAACATAGCAAACATAATAAAATGATAAGATAAGCCATAAAGG
   GGCT  CCA TGTT  GGAAGGCGT    AGGCGTAATA                                                                                                                                                                                                                                               
   ||||  ||| ||||  |||||||||    ||||||||||                                                                                                                                                                                                                                               C
   TCGG  GGT ACAA  CCTTCCGCG    TCCGCAGGCG                                                                                                                                                                                                                                               
  C    TT   C    TA         CTAA          GATCCGCCCTTTTTGTTGTTCCGTGGCCGTTTTGCGGAGCGGAGCCTGTTCCACTACTTTATTCCGTCGGCTGGCTCCTTACTGATTCCTTAGCGCGCTTTAGCTACTCCTTAGCTAAAGGCGCTGCGGCTCCGCCGCTTTAGACGATAATCCGCAATTTTGATTCTTATTTTTTGTGTATCAAGCGGGATTTGACTTTCTAAAACACACTAGTGGATCCTTGGATGCACAAACTGTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End