Plant MITE

SE4330023

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3314
Linum usitatissimum
SE4330023
hAT
Hat9
scaffold35:129633-130244
CTCCCTAG
AGTAGGGCAGTTGACGAATCAAGCC

Secondary structure and sequence

TSD TIR

5'

3'

CTCCCT        A   G C     A    --G      GCCAGCTCGGGGTTTGGTTTGGTAAAAGCTCGGTCCTGACTGGACTCAATTTTAAACAAGTCAAGCTTGAGCTAGGGTATGTTTGACTCAATAGGCTTGCGACCTGGCTCAAGCTAGCGCTCAAAATTCAACTCGAATACTAACTCGAGTATATAGCTCGTTAATAGACTCAATAATGCGACATGTGTTTTGCCTCGAAAATCATATACATAAATTATAATTAATTTATGATTGTACCAATGAAAATATAGGTGATATTTAACTATT
      AGTAGGGC GTT A GAATC AGCC   CTCGAG                                                                                                                                                                                                                                                                           
      |||||||| ||| | ||||| ||||   ||||||                                                                                                                                                                                                                                                                            
      TCATCTCG CAA T CTTGG TTGG   AGCTTG                                                                                                                                                                                                                                                                           
GATCCC        A   G A     C    ATC      AAATTACACGAGTTCGAACCGAACCATTCAAATCCGTACGAGCTTAGGCTCGATCTTTTAAAACCGAACAGTGCTCGAACTTAGGATAAGCTCGAACCGAACAATTTATATAAACTGCCTAGTTTGTGCTCGAGTTGAACTTGTATTTTTTGACAGCTACTCAGATAAAACTTGATTAAAACTTCGAACGTTTGATTTTTTATAACTGCTCAGTTCAATTTCTTCTTCTATAGTATTTTGAATATTAAAAAATGAAAAGAGTTAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4330023

CTCCCTAGTAGGGCAGTTGACGAATCAAGCCGCTCGAGGCCAGCTCGGGGTTTGGTTTGGTAAAAGCTCGGTCCTGACTGGACTCAATTTTAAACAAGTCAAGCTTGAGCTAGGGTATGTTTGACTCAATAGGCTTGCGACCTGGCTCAAGCTAGCGCTCAAAATTCAACTCGAATACTAACTCGAGTATATAGCTCGTTAATAGACTCAATAATGCGACATGTGTTTTGCCTCGAAAATCATATACATAAATTATAATTAATTTATGATTGTACCAATGAAAATATAGGTGATATTTAACTATTTTAATTGAGAAAAGTAAAAAATTATAAGTTTTATGATATCTTCTTCTTTAACTTGACTCGTCAATATTTTTTAGTTTGCAAGCTTCAAAATTAGTTCAAAATAGACTCATCGACAGTTTTTTATGTTCAAGTTGAGCTCGTGTTTGATCCGTCAAATATATTTAACAAGCCAAGCTCGAATAGGATTCAAGCTCGTGACAAGCCAAAATTTTCTAGCTCGGATTCGAGCATGCCTAAACTTACCAAGCCAAGCTTGAGCACATTAAAGTTCGACTAGGTTCGGTTCATGAACAGCTCTACTCCCTAG

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