SE4350024

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3315
  • Linum usitatissimum
  • SE4350024
  • PIF/harbinger
  • To2
  • scaffold184:353777-354080
  • TTA
  • ATGCTATGTTTGGCAATAGGAATCATAATTCCTAGGAATGTGA

Secondary structure and sequence

TSD    TIR
5'



3'
TT                          A           -T    AATT   A    ACAAAA  A        A   T       -        AA   TGTAAAATC   T         G    -CTAG    GTTTA      C   GA
  ATGCTATGTTTGGCAATAGGAATCAT ATTCCTAGGAA  GTGA    AGA TAGT      AA TTGAGTTG GGT GGAAGGG ATTGTGAA  GAA         AAA GATATAAGG ATTC     GGAA     TTTTCC ATT  
  |||||||||||||||||||||||||| |||||||||||  ||||    ||| ||||      || |||||||| ||| ||||||| ||||||||  |||         ||| ||||||||| ||||     ||||     |||||| |||  G
  TACGATATAAACCGTTATCCTTAGTA TAAGGATCCTT  TACT    TCT ATTA      TT AACTCAAC TCA TCTTTTT TAGTACTT  CTT         TTT CTATATTCC TAAG     CCTT     AAAAGG TAG  
AT                          C           TC    CAAC   G    CATTCG  C        C   -       A        AC   TGAACCTAA   C         -    ATTAA    AGTAC      A   AT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End