SE4330025

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3316
  • Linum usitatissimum
  • SE4330025
  • hAT
  • Hat11
  • scaffold206:77357-77986
  • GATTCATG
  • CATGCAATGGCGGAATTGGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
GATT    ----                 -----CCT      --   GAGCCATCGCCCAGGGTCTCTCGTCCCAGAGTGTCGAATTTCTATGTAAAAGTTTACGTATTTTTGAGTTTCGCCCATTGTGGTTTGAAATTTTGCCCAGTGTATTTTTAAACTTGCCTAGTGTTGAACCATTATTTAAAATTCACTCATTAGATAAGACCATTTTAACTTGAGTCCAAACTCTATTAAACTTGAGTCCAAACTCTTAAATAGATAATAACGTATCAAATTTAAAATTATAATCAATTTGTTAATTAGTAATAATCATAAGTTT
    CATG    CAATGGCGGAATTGGGA        GGCGAA  CTC                                                                                                                                                                                                                                                                                  
    ||||    |||||||||||||||||        ||||||  |||                                                                                                                                                                                                                                                                                  A
    GTAC    GTTACCGCCTTGATCCT        CTAAGA  AGC                                                                                                                                                                                                                                                                                  
        TTAA                 ACTACTCT      CT   CTTAAAGTTTATATTCTTAGTTAACTATATTCTTTAATTGATACCATTATAAAAAGTAATTATTATCATTTTAGTTCCCGTATTAGTAGTAACTTTGCAAATAACTCAACTTAAAACTAACTTATAAACATATAGTTAACAGCTTAGGTAATGAAAAATAGATTATGTTTACATGTTATTATTTGCTCTTTATGTAAACAATATGAAAAATTAATTTGGTTTAAATTTACACGATGACTGTTTAAAAAAAGAAGATTTAAACTAATTAAATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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