Plant MITE

SE4330031

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3322
Linum usitatissimum
SE4330031
hAT
Hat13
scaffold346:183108-183307
CTCTGAAT
TCTGAATCAGTGGCGGATTCAG

Secondary structure and sequence

TSD TIR

5'

3'

 C  T   T                  TGTCCCCCAGGTTCGTCTTAGTGTATTTTTGGATTTTGAAGTTTGATGCTATGTAATTTTTCTTATGTTTTTTT
  TC GAA CAGTGGCGGATTCAGTGG                                                                          
  || ||| ||||||||||||||||||                                                                           
  AG CTT GTTGCTGCCTAGGTTTTA                                                                          
TA  T   -                  CAAAATTATGTGACACAGCTTAACATATTCTCAAGTTTATGTAATCTGGCATATATCTTTTTTTCAGTTAATTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4330031

CTCTGAATCAGTGGCGGATTCAGTGGTGTCCCCCAGGTTCGTCTTAGTGTATTTTTGGATTTTGAAGTTTGATGCTATGTAATTTTTCTTATGTTTTTTTGTTAATTGACTTTTTTTCTATATACGGTCTAATGTATTTGAACTCTTATACAATTCGACACAGTGTATTAAAACATTTTGGATCCGTCGTTGTTCTGAAT

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