SE4350033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3324
  • Linum usitatissimum
  • SE4350033
  • PIF/harbinger
  • To8
  • scaffold571:80353-80807
  • TTA
  • ATGGGTTGTTTGGATGAGGTATTTGGGTGAGGTATTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT   G              -GTA        --A        ----C     -        GTTTTGAGTTATTTCGGTCAAATTCGTTTGGCATCAACACAAAATCGGTGGTATTCCGGATTGTGGTATTTCAAATAACTGACTTTTGAGTTATTTCCAATATCTCATCAAATGACTCGTTTAGCAACCAAACCAAAATATGTGGTAGTTTGGGATGTGGTATTTGAAA
  ATG GTTGTTTGGATGAG    TTTGGGTG   GGTATTTT     GCCGA AATAACTC                                                                                                                                                                         
  ||| ||||||||||||||    ||||||||   ||||||||     ||||| ||||||||                                                                                                                                                                         T
  TGC CAACAAACCTACTC    AAACCTAT   TCATAAAA     TTTTA TACCCATT                                                                                                                                                                         
AT   G              AATA        ACA        CCTTA     C        AAACTCTTACACCACAAATACTCCACGTAACCCACACTATTAATAGAACAAACCCATTACCCAATACGTTACACCATAAAACATTGCTTTTATGGTGTAAGAGTTTTATCACTCCATAAAGTTTATGGATCCACGACCACTCCATAAACTTTATTGAGTTTTTACTCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End