SE4350035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3326
  • Linum usitatissimum
  • SE4350035
  • PIF/harbinger
  • To2
  • scaffold859:117479-117782
  • TAA
  • CTATGTTTGGCAATTGGAATATGATTCCTAGGAAAGTTGAATTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATG              T     -      C             A    AATAATACAA     -        A         G -   CA A  AAAAAT   AAAT        TATG         --TA    AGT    -       TGAAA
     CTATGTTTGGCAAT GGAAT ATGATT CTAGGAAAGTTGA TTGA          AATGG TTGAGTTG GGTTGGAAG A ATT  G GA      GCT    TCAAAGGA    AAGGATTCC    GGAA   TTAT TTTCCCA     
     |||||||||||||| ||||| |||||| ||||||||||||| ||||          ||||| |||||||| ||||||||| | |||  | ||      |||    ||||||||    |||||||||    ||||   |||| |||||||      
     GATACAAACCGTTA CCTTA TACTAA GATTCTTTCAACT AACT          TTGCT AACTCAAC CTGATCTTT T TAA  C CT      TGA    AGTTTCCT    TTCCTAAGG    CCTT   AGTA AAAGGGT     
AATCG              T     G      A             C    -CTGATCACA     T        -         G A   CA -  -ACCTT   ACTT        -TTA         TTAA    ---    C       TAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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