SE4330036

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3327
  • Linum usitatissimum
  • SE4330036
  • hAT
  • Hat2
  • scaffold326:381547-382015
  • GGTTCAAA
  • TAGGCTTGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GGTTCAAA           ---------------  -  - C    A   A -               --  AA CCCCGCCCGCAATTACAACCGAGTTTTACCCGTCCCCCGTCCGGAGTAAGTAATGGATACCGAACCACTATCCATCCCTGTATTCTTTCGGGTTTGGGTATTCTCGGGTTTTACCCGCCACAATGAATTCATTCACATTGAATCAAAATCTGCATGCAACACTACCACTTGG
        TAGGCTTGGCA               AC GG G GGGT TGG G TCGGATGGTTATTCC  CC  T                                                                                                                                                                            
        |||||||||||               || || | |||| ||| | |||||||||||||||  ||  |                                                                                                                                                                             
        ATCCGAACCGT               AG CT A AATG GGC C GGGCAGGTTAGTTTG  TA  A                                                                                                                                                                            
AAATTTGG           AAAATTTAATTTCTT  C  A -    -   - T               AG  -- TTTTTTGGGTAAACTAAGCCTAAAGCCTGCCCCGGCCCGTTTGAGCCTTCACCACTAATTTGCCCCTACCCAGCCCCGGCCTAAAGTCTGATAGGTTGGGCAGGGGCAGGCCTTAACGTTGGGAAGCTTAGTATTAGACGTACGTTCCTGTGCACTTTCTCACCACTATTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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