SE4350037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3328
  • Linum usitatissimum
  • SE4350037
  • PIF/harbinger
  • To9
  • scaffold701:155393-155812
  • TAA
  • AGACCATCTCTAGTGCATAGTCTCAAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              G AT   C        CCAA   GCTA  TTATAAGATTAAAACTCCTTCAATGCATAAAGCTAAAGTCTCAAATGGCTAAAAGATTCCATTTTAAGTCCTATATTTGGCTAATTCAAGTCTCAAATGGCCAAATTTGAGATTTCGTGGAATCCATATGGCTTCTTTCTATTGACTATTGGTGGACACATTTTCAT
  AGACCATCTCTAGT C  AGT TCAAATGG    AGT    AA                                                                                                                                                                       
  |||||||||||||| |  ||| ||||||||    |||    ||                                                                                                                                                                        
  TCTGGTAGAGGTTA G  TCA AGTTTACC    AAG    TT                                                                                                                                                                       
AA              G AT   T        CATA   ----  TTAGAACTTAAACTGTGAAATCTTATCGATTTTTCCACAAAACGAAGTTACCACATAAGAATATAAATCTTGAGTATAGTTGTACACAGATGGTTGGAAGTTAGATTTATTCGGTGTACTTAAAGTGATAGGTAGAGAAAAGTTTTTTATTTATTTTCCATTAGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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