SE4350038

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3329
  • Linum usitatissimum
  • SE4350038
  • PIF/harbinger
  • To2
  • scaffold859:117479-117782
  • TTA
  • GCCTATGTTTGGCAATAGGAATCATGATTTCTAAGAAAGTTGAGTTGAGACTAGTGTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTA  C             A     C          A                C        -CGAA         ACTAGAAACATATTG    T   AACTTGAA      GAAATAAGGATTCCAATTGGAATCATGTTTCCCAATCTATTTCATGGGAA
    GC TATGTTTGGCAAT GGAAT ATGATTTCTA GAAAGTTGAGTTGAGA TAGTGTAA     TTGAGTTGG               TGGA GGA        TCAAAG                                                  
    || ||||||||||||| ||||| |||||||||| |||||||||||||||| ||||||||     |||||||||               |||| |||        ||||||                                                  A
    CG ATACAAACCGTTA CCTTA TACTAAGGAT CTTTCAACTTAACTTT ATTATGTT     AACTCAACT               ACCT CCT        TAAGTC                                                  
ATTA  -             A     -          C                -        TTACC         ------------CCA    T   --------      TCTTTTTTACGATTTAAGTTTCCTATACTTCCTAAGGATCCTTTCAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3