Plant MITE

SE4350039

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3330
Linum usitatissimum
SE4350039
PIF/harbinger
To4
scaffold418:1089699-1089981
GAT
GGCTTGGTTTGACAACAGGAATCATGATTCATAGGAAAGTTGAGTTGAGACTAGTGTAAGAAATTAGAGTTGAAGTAGGGAGAGATTGTGGAAGGAAATTTGGATCAAGGCATATAAGGATTCCAAGTGGAA

Secondary structure and sequence

TSD TIR

5'

3'

GAT           A          C       A          G        C     T      --  A       A  A     A A            AT       -AA  C             A  T    TGGAAA
   GGCTTGGTTTG CAACAGGAAT ATGATTC TAGGAAAGTT AGTTGAGA TAGTG AAGAAA  TT GAGTTGA GT GGGAG G TTGTGGAAGGAA  TTGGATC   GG ATATAAGGATTCC AG GGAA      
   ||||||||||| |||||||||| ||||||| |||||||||| |||||||| ||||| ||||||  || ||||||| || ||||| | ||||||||||||  |||||||   || ||||||||||||| || ||||       
   CCGAACCAAAC GTTGTTCTTA TACTAAG ATCCTTTCAA TCAATTCT ATCAC TTTTTT  AA CTTAACT CA CTCTC C AACACTTTCCTT  AATTTAG   CC TATATTCCTAAGG TC CTTT      
TAG           C          A       G          G        A     T      CC  A       C  A     C C            AC       ATA  -             A  -    TAAATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4350039

GATGGCTTGGTTTGACAACAGGAATCATGATTCATAGGAAAGTTGAGTTGAGACTAGTGTAAGAAATTAGAGTTGAAGTAGGGAGAGATTGTGGAAGGAAATTTGGATCAAGGCATATAAGGATTCCAAGTGGAATGGAAACTAAATTTTCCTAGGAATCCTTATATCCATAGATTTAACATTCCTTTCACAACCCCTCTCAACCTCAATTCAAACCTTTTTTTCACTAATCTTAACTGAACTTTCCTAGGAATCATAATTCTTGTTGCCAAACCAAGCCGAT

Copy Cancel