SE4330040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3331
  • Linum usitatissimum
  • SE4330040
  • hAT
  • Hat4
  • scaffold109:193503-194015
  • GATCACAC
  • CCAATGGCGGAACCAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GATCACA   A         C   ATGAATATATGCAC  AG      TTGAATTGAAAATTTGTATGTCTATCGAGTAACTAATTGACGAATTAATCGTAATACTAATTTTTAAAATAAAAACAACTTCATTATACTGCTTTTAGGTGAAAATGTAATATATGGGCCACCTGCGAGTTTTTTGTCCTATATTTGAATATTTTGAATTAAATTTATGATTGTTACATATTCTAAAAAAATAAGTAGAAGAGCAAAACTTC
       CCA TGGCGGAAC AGG              TG  CTGGAC                                                                                                                                                                                                                    
       ||| ||||||||| |||              ||  ||||||                                                                                                                                                                                                                    A
       GGT ACCGTCTTG TCC              GA  CCCCAC                                                                                                                                                                                                                    
CACACTA   C         A   -------CCCACCG  -T      CGGGCTTAGTGGGGTCAAAACCAGACCTGGTAATTAAAACCCACATATTAACATTTAAAATGCTCAAGCTGAGTCCCTTTAAAACTCGAGCCGAGTCACGAACCAGCACAGCTTTGATCTACCTGGTCACTCTCAAGGTTGATAGAACAAAAAACCAGAGCTCATGATTTATACATTTTAAAACTACTAAAGTATTGAGCCCATTATCATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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