SE3920017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3915
  • Vitis vinifera
  • SE3920017
  • Mutator
  • M2
  • chr9:10539442-10539726
  • ATATTAATA
  • TATTAATAGGGATAACCGATTAAAAGGGATGAAATCTTCTCTACTTTGGAAAACTAACCCTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
A        G    -  CC         G       T T    TAC    GA         C   ACCT     C   CTAAA    ----  C           A         -  -       ----C     -----------    TTAC
 TATTAATA GGAT AA  GATTAAAAG GATGAAA C TCTC   TTTG  AAACTAACC TTC    TTTTT AAC     AAGT    AC TATTTTTGACA AAATGCCCT CA TATTTTT     TTGCA           AAAG    
 |||||||| |||| ||  ||||||||| ||||||| | ||||   ||||  ||||||||| |||    ||||| |||     ||||    || ||||||||||| ||||||||| || |||||||     |||||           ||||    C
 ATAATTAT CCTA TT  CTAATTTTT CTACTTT G AGGG   AAAC  TTTGATTGG AAG    AAAAA TTG     TTCA    TG GTAAAAACTGT TTTATGGGA GT ATAAAAA     GATGT           TTTC    
         A    A  AA         A       T T    TTT    AT         -   GATT     C   --AAC    CAAT  A           A         A  T       TAATA     ACACACAAAAT    TTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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